Publications

• Chen, X., He, C., Zhang, Q., & Wang, X. (2023). Modularized design and construction of tunable microbial consortia with flexible topologies. ACS Synthetic Biology 2024 13 (1), 183-194. https://doi.org/10.1021/acssynbio.3c00420

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• He, C., Han, L., Harris, D. C., Wang, X., & Kuang, Y. (2023). Reaction-diffusion modeling of E. Coli colony growth based on nutrient distribution and agar dehydration. Bulletin of Mathematical Biology, 85(7), 61. https://doi.org/10.1007/s11538-023-01163-2 

 

• Harris, D. C., He, C., Preul, M., Kostelich, E., & Kuang, Y. (2023). Critical patch size of a two-population reaction-diffusion model describing brain tumor growth. SIAM Journal on Applied Mathematics, S249-S268. https://doi.org/10.1137/22M1509631 

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• He, C., Zhou, P., & Nie, Q. (2023). exFINDER: Identify external communication signals using single-cell transcriptomics data. Nucleic Acids Research, gkad262. https://doi.org/10.1093/nar/gkad262  

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• Han, L., He, C., Dinh, H., Fricks, J., & Kuang, Y. (2022). Learning Biological Dynamics From Spatio-Temporal Data by Gaussian Processes. Bulletin of Mathematical Biology, 84(7), 1-20. https://doi.org/10.1007/s11538-022-01022-6

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• Phan, T., He, C., Loladze, I., Prater, C., Elser, J., & Kuang, Y. (2022). Dynamics and growth rate implications of ribosomes and mRNAs interaction in E. coli. Heliyon, 8(7), e09820. https://doi.org/10.1016/j.heliyon.2022.e09820

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• Melendez-Alvarez, J., He, C., Zhang, R., Kuang, Y., & Tian, X. J. (2021). Emergent Damped Oscillation Induced by Nutrient-Modulating Growth Feedback. ACS Synthetic Biology, 10(5), 1227-1236. https://doi.org/10.1021/acssynbio.1c00041

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• Han, L., He, C., & Kuang, Y. (2020). Dynamics of a model of tumor-immune interaction with time delay and noise. Discrete & Continuous Dynamical Systems-S, 13(9), 2347. https://doi.org/10.1021/acssynbio.1c00041

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• He, C., Bayakhmetov, S., Harris, D. C., Kuang, Y., & Wang, X. (2020). A Predictive Reaction-Diffusion Based Model of E. coli Colony Growth Control. IEEE Control Systems Letters, 5(6), 1952-1957. https://doi.org/10.1109/LCSYS.2020.3046612

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• Han, L., Eikenberry, S., He, C., Johnson, L., Preul, M. C., Kostelich, E. J., & Kuang, Y. (2019). Patient-specific parameter estimates of glioblastoma multiforme growth dynamics from a model with explicit birth and death rates. Mathematical biosciences and engineering: MBE, 16(5), 5307. https://doi.org/10.3934/mbe.2019265 

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• Phan, T., He, C., Martinez, A., & Kuang, Y. (2019). Dynamics and implications of models for intermittent androgen suppression therapy. Mathematical Biosciences and Engineering, 16(1), 187-204. https://doi.org/10.3934/mbe.2019010

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